Distributed Holistic Clustering on Linked Data

Link discovery is an active field of research to support data integration in the Web of Data. Due to the huge size and number of available data sources, efficient and effective link discovery is a very challenging task. Common pairwise link discovery approaches do not scale to many sources with very large entity sets. We here propose a distributed holistic approach to link many data sources based on a clustering of entities that represent the same real-world object. Our clustering approach provides a compact and fused representation of entities, and can identify errors in existing links as well as many new links. We support a distributed execution of the clustering approach to achieve faster execution times and scalability for large real-world data sets. We provide a novel gold standard for multi-source clustering, and evaluate our methods with respect to effectiveness and efficiency for large data sets from the geographic and music domains

Large Oligomeric Complex Structures Can Be Computationally Assembled by Efficiently Combining Docked Interfaces

Macromolecular oligomeric assemblies are involved in many biochemical processes of living organisms. The benefits of such assemblies in crowded cellular environments include increased reaction rates, efficient feedback regulation, cooperativity and protective functions. However, an atom‐level structural determination of large assemblies is challenging due to the size of the complex and the difference in binding affinities of the involved proteins. In this study, we propose a novel combinatorial greedy algorithm for assembling large oligomeric complexes from information on the approximate position of interaction interfaces of pairs of monomers in the complex. Prior information on complex symmetry is not required but rather the symmetry is inferred during assembly. We implement an efficient geometric score, the transformation match score, that bypasses the model ranking problems of state‐of‐the‐art scoring functions by scoring the similarity between the inferred dimers of the same monomer simultaneously with different binding partners in a (sub)complex with a set of pregenerated docking poses. We compiled a diverse benchmark set of 308 homo and heteromeric complexes containing 6 to 60 monomers. To explore the applicability of the method, we considered 48 sets of parameters and selected those three sets of parameters, for which the algorithm can correctly reconstruct the maximum number, namely 252 complexes (81.8%) in, at least one of the respective three runs. The crossvalidation coverage, that is, the mean fraction of correctly reconstructed benchmark complexes during crossvalidation, was 78.1%, which demonstrates the ability of the presented method to correctly reconstruct topology of a large variety of biological complexes. Proteins 2015; 83:1887–1899. © 2015 The Authors. Proteins: Structure, Function, and Bioinformatics Published by Wiley Periodicals, Inc

Declarative Choreographies and Liveness

Part 1: Full PapersInternational audienceWe provide the first formal model for declarative choreographies, which is able to express general omega-regular liveness properties. We use the Dynamic Condition Response (DCR) graphs notation for both choreographies and end-points. We define end-point projection as a restriction of DCR graphs and derive the condition for end-point projectability from the causal relationships of the graph. We illustrate the results with a running example of a Buyer-Seller-Shipper protocol. All the examples are available for simulation in the online DCR workbench at http://dcr.tools/forte19

Macbeth

analysis done 1998, revised 2002. Some scenes I would now characterise as extrusionsand I would switch Lady Macbeth's entrance in 2.2 to the inwards door. Despite Banquo's references in 2.1 that would place her elsewhere than Duncan's chambers, she now suddenly appears from there, having 'laid their daggers ready' (2.2.11). A surprise re-entrance as in Antony and Cleopatra 1.2

The dependence of intrinsic alignment of galaxies on wavelength using KiDS and GAMA

The outer regions of galaxies are more susceptible to the tidal interactions that lead to intrinsic alignments of galaxies. The resulting alignment signal may therefore depend on the passband if the colours of galaxies vary spatially. To quantify this, we measured the shapes of galaxies with spectroscopic redshifts from the GAMA survey using deep gri imaging data from the KiloDegree Survey. The performance of the moment-based shape measurement algorithm DEIMOS was assessed using dedicated image simulations, which showed that the ellipticities could be determined with an accuracy better than 1% in all bands. Additional tests for potential systematic errors did not reveal any issues. We measure a significant difference of the alignment signal between the g,r and i-band observations. This difference exceeds the amplitude of the linear alignment model on scales below 2 Mpc/h. Separating the sample into central/satellite and red/blue galaxies, we find that that the difference is dominated by red satellite galaxies.Comment: 16 pages, 13 figures, accepted, to appear in A&

Feature Lines for Illustrating Medical Surface Models: Mathematical Background and Survey

This paper provides a tutorial and survey for a specific kind of illustrative visualization technique: feature lines. We examine different feature line methods. For this, we provide the differential geometry behind these concepts and adapt this mathematical field to the discrete differential geometry. All discrete differential geometry terms are explained for triangulated surface meshes. These utilities serve as basis for the feature line methods. We provide the reader with all knowledge to re-implement every feature line method. Furthermore, we summarize the methods and suggest a guideline for which kind of surface which feature line algorithm is best suited. Our work is motivated by, but not restricted to, medical and biological surface models.Comment: 33 page

muCool: A novel low-energy muon beam for future precision experiments

Experiments with muons ($\mu^{+}$) and muonium atoms ($\mu^{+}e^{-}$) offer several promising possibilities for testing fundamental symmetries. Examples of such experiments include search for muon electric dipole moment, measurement of muon $g-2$ and experiments with muonium from laser spectroscopy to gravity experiments. These experiments require high quality muon beams with small transverse size and high intensity at low energy. At the Paul Scherrer Institute, Switzerland, we are developing a novel device that reduces the phase space of a standard $\mu^{+}$ beam by a factor of $10^{10}$ with $10^{-3}$ efficiency. The phase space compression is achieved by stopping a standard $\mu^{+}$ beam in a cryogenic helium gas. The stopped $\mu^{+}$ are manipulated into a small spot with complex electric and magnetic fields in combination with gas density gradients. From here, the muons are extracted into the vacuum and into a field-free region. Various aspects of this compression scheme have been demonstrated. In this article the current status will be reported.Comment: 8 pages, 5 figures, TCP 2018 conference proceeding

Are transnational tobacco companies' market access strategies linked to economic development models? A case study of South Korea.

Transnational tobacco companies (TTCs) have used varied strategies to access previously closed markets. Using TTCs' efforts to enter the South Korean market from the late 1980s as a case study, this article asks whether there are common patterns in these strategies that relate to the broader economic development models adopted by targeted countries. An analytical review of the existing literature on TTCs' efforts to access emerging markets was conducted to develop hypotheses relating TTCs' strategies to countries' economic development models. A case study of Korea was then undertaken based on analysis of internal tobacco industry documents. Findings were consistent with the hypothesis that TTCs' strategies in Korea were linked to Korea's export-oriented economic development model and its hostile attitude towards foreign investment. A fuller understanding of TTCs' strategies for expansion globally can be derived by locating them within the economic development models of specific countries or regions. Of foremost importance is the need for governments to carefully balance economic and public health policies when considering liberalisation

Neumark Operators and Sharp Reconstructions, the finite dimensional case

A commutative POV measure $F$ with real spectrum is characterized by the existence of a PV measure $E$ (the sharp reconstruction of $F$) with real spectrum such that $F$ can be interpreted as a randomization of $E$. This paper focuses on the relationships between this characterization of commutative POV measures and Neumark's extension theorem. In particular, we show that in the finite dimensional case there exists a relation between the Neumark operator corresponding to the extension of $F$ and the sharp reconstruction of $F$. The relevance of this result to the theory of non-ideal quantum measurement and to the definition of unsharpness is analyzed.Comment: 37 page